Total Genomics Solution · Developed by Genosys Inc.
Mendel Analytics
The world's first genomic big data visualisation and automated analysis software for high-throughput sequencing data.
A local server-based platform that enables automated workflow analysis and reporting of NGS, PacBio, and ONT sequencing data. Our data visualisation and automated computational analysis technology eliminates errors and result discrepancies caused by manual analysis — establishing a systematic, secure, comparable, and reproducible bioinformatics protocol for your research laboratory.
The Platform
Transforming Sequencing Data
into Actionable Insights
In the era of genomic big data, the challenge is no longer generating sequencing data — it is visualising and interpreting it effectively, reproducibly, and at scale. Mendel Analytics addresses this critical need by providing a comprehensive local server platform that transforms raw NGS, PacBio, and ONT output into publication-ready biological insights.
Developed by Genosys Inc. — a subsidiary of Total Genomics Solution — Mendel Analytics represents years of applied bioinformatics expertise, designed specifically for the unique challenges of genomic data analysis in research and institutional settings across Asia-Pacific.
Because the platform is installed locally on your institution's server, all raw data, intermediate files, and results remain entirely within your secure environment — satisfying data governance requirements for government agencies, universities, and regulated research institutions.
Core Capabilities
Three Pillars of the Platform
Platform Features
Everything Your Laboratory Needs
Local Server-Based Deployment
Installed locally on your institution's server to ensure data security, efficient processing, and full compliance with data sovereignty regulations. Sensitive genomic data never leaves your secure environment.
200+ Tools and Databases
Pre-loaded with more than 200 popular open-source bioinformatics tools, common workflows, and curated databases — covering the full spectrum of NGS, PacBio, and ONT data analysis.
Drag-and-Drop Graphical Interface
Without the need to learn any programming language, researchers can set up any workflow of their choice to analyse sequencing data with ease — freeing them to concentrate on solving biological problems.
Automated Reporting System
After every analysis is completed, a detailed report is automatically generated in interactive HTML and PDF formats, providing in-depth interpretation of results with high-clarity figures and diagrams.
Adjustable Parameter Settings
Standard and customised analysis modes with fully adjustable parameter settings, enabling both routine workflows and advanced, project-specific analytical configurations.
Push Notifications & Email Alerts
Push notifications for tool and workflow upgrades keep your platform current. Automated email delivery of query results notifies users immediately upon analysis completion.
Rights and User Management
Granular access control assigns different levels of permissions to different users — supporting multi-user research environments, institutional governance requirements, and collaborative projects.
Flexible API Integration
A highly flexible API interface connects Mendel Analytics to the internal data management systems of integrated data centres, enabling seamless embedding within institutional bioinformatics infrastructure.
Customisation Service
Customisation service available for the integration of designated tools, databases, and pipelines into Mendel Analytics — tailored to the specific analytical requirements of your research programme.
Multi-Omics Data Integration
Unified analysis of genomics, transcriptomics, epigenomics, and proteomics data. Captures gene expression insights, gene regulation analysis, and cross-omics correlations in a single platform.
Analysis Modules
Supported Analysis Capabilities
Differential expression analysis, pathway enrichment, and gene ontology visualisation with interactive heatmaps, volcano plots, and MA plots. Supports DESeq2, edgeR, and limma workflows.
SNP and InDel detection, structural variant discovery, and genome browser integration. Supports GATK, FreeBayes, and DeepVariant pipelines with interactive variant annotation tables.
Transcription factor binding site analysis, promoter region visualisation, ChIP-seq peak calling, and regulatory network construction from multi-omics data.
Multi-genome alignment, whole-genome synteny analysis, and evolutionary relationship mapping. Publication-quality collinearity plots and dot-plot visualisations included.
DNA methylation pattern visualisation (WGBS, RRBS), differentially methylated region identification, and epigenetic landscape mapping across tissues and conditions.
Population structure analysis (PCA, ADMIXTURE), genome-wide association studies, linkage disequilibrium mapping, and genomic selection model construction for crop breeding programmes.
How It Works
Five Steps from Raw Data to Report
Upload raw sequencing files (FASTQ, BAM, VCF) from NGS, PacBio, or ONT instruments into the local server storage.
Use the drag-and-drop graphical interface to assemble any analysis pipeline from 200+ pre-loaded tools, or select a pre-built workflow template.
Auto-generated command lines execute the full pipeline — eliminating manual errors and ensuring reproducible, comparable results across runs.
A comprehensive analysis report is generated automatically in both interactive HTML and PDF formats, with clear data tabulation and high-clarity figures.
The system notifies users by email upon completion, delivering a direct link to the report — no manual checking or file transfer required.
Tool Library
200+ Functional Modules
Mendel Analytics is pre-loaded with more than 200 popular open-source tools, databases, and workflow templates — covering the full spectrum of human, plant & animal, and microbial genome analysis. Tools are updated continuously via 1-click push upgrades.
| Functional Module | Tools | Functional Module | Tools |
|---|---|---|---|
| Raw data filtering and quality control | 15 | Expression analysis | 7 |
| De novo assembly | 3 | Gene prediction | 3 |
| Hi-C scaffolding | 2 | Gene cluster analysis | 1 |
| SNP and InDel detection | 2 | Gene function annotation | 12 |
| Reads alignment | 12 | Transcription factor prediction | 1 |
| Paired-end reads stitching | 4 | Comparison between transcript sets | 1 |
| Single-cell analysis | 4 | Repeat prediction | 1 |
| RNA assembly | 5 | Methylation site detection | 1 |
| RNA structure analysis | 1 | Peak detection | 1 |
| Novel transcripts detection | 1 | Motif detection | 1 |
| LncRNA function annotation | 3 | Sequencing clustering analysis | 3 |
| LncRNA prediction | 6 | BSA / BSR analysis | 1 |
| miRNA target gene prediction | 5 | Metagenome and metatranscriptome | 15 |
| New miRNA prediction | 2 | Population genetics analysis | 36 |
| Small RNA annotation | 1 | 16S / 18S analysis | 47 |
| Circular RNA detection | 1 | Hereditary disease screening | 2 |
| Variable polyA detection | 1 | Format converter | 5 |
| Fusion gene detection | 5 | Annotation tools | 4 |
| Alternative splicing analysis | 3 | Drawing tools | 23 |
| Differential analysis | 11 | Other bioinformatics tools | 21 |
Infrastructure
Hardware Specifications
Mendel Analytics is delivered as a turnkey local server solution. Four standard configurations are available to match the throughput requirements of individual laboratories, core facilities, and integrated data centres. All models include 2 years of free upgrades and maintenance.
| Specification | G100 Standard | G200 Premium | G500 Professional | G1000 Customised |
|---|---|---|---|---|
| CPU | Intel E5-2600V4 | Intel E5-2600V4 | Intel E5-2600V4 | Customised |
| CPU Cores | 32 | 48 | 72 | Customised |
| RAM | DDR4 128 GB | DDR4 256 GB | DDR4 512 GB | Customised |
| Storage | 12 TB | 24 TB | 32 TB | Customised |
| Parallel Analyses* | 6 | 12 | 18 | >100 |
| Samples / Day* | 40 | 60 | 90 | >100 |
| Free Upgrade & Maintenance | 2 years | 2 years | 2 years | 2 years |
* Calculation based on 6 Gb RNA-Seq per sample.
Comparison
Mendel Analytics vs. Outsourcing
Outsourcing bioinformatics analysis to external service providers introduces delays, data security risks, and high recurring costs. Mendel Analytics eliminates all three.
| Dimension | Outsourcing | Mendel Analytics |
|---|---|---|
| Data Control | Customer provides sample; vendor retains data during analysis | Full control over data, analysis procedure, and results at all times |
| Standard Bioinformatics Turnaround | 7–14 working days | 0.5–3 working days |
| Customised Analysis Turnaround | 14–21 working days | A few minutes to 1 hour |
| Sequencing Turnaround | 14–21 working days (vendor sequencing) | 3–5 working days (with own sequencer) |
| Data Security | Data transferred to vendor servers; risk of leakage or misuse | All data stored and analysed locally — never leaves your institution |
| Communication Cost | High — repeated back-and-forth for parameter changes and revisions | Low — researchers run their own analysis directly |
| Result Delivery | Vendor delivers results via FTP | Real-time tracking; automated report with email notification |
Comparison
Mendel Analytics vs. Cloud Computing
Cloud computing services charge by data volume and introduce upload/download bottlenecks and data sovereignty concerns. Mendel Analytics provides the same analytical power — locally, securely, and at a fixed cost.
Data uploaded to third-party cloud servers; subject to vendor data retention and deletion policies.
All analysis data, tools, workflows, and databases are stored on local servers — preventing data leakage and ensuring full data sovereignty compliance.
Cloud services charge per GB of data processed; costs scale with data volume and repeat analyses.
Supports parallel access from multiple users. Unlimited repeat or new analyses on existing data at any time — at a fixed infrastructure cost with no per-run charges.
Large genomic datasets require hours of upload and download time before and after analysis.
All data is saved and analysed locally — the tedious process of uploading and downloading data is eliminated, significantly shortening turnaround time.
Integration with institutional LIMS or data management systems requires custom cloud connectors and external API management.
A highly flexible API interface provides direct connection to the internal data management system of an integrated data centre — no external connectors required.
Comparison
Mendel Analytics vs. Leading Competitor
Mendel Analytics is a purpose-built genomic big data platform designed for multi-user research institutions. The comparison below highlights the key differences against a leading desktop bioinformatics software package.
| Category | Leading Competitor | Mendel Analytics | Notes |
|---|---|---|---|
| Hardware | Generally does not provide a server; installed directly on a personal or platform computer. | High-spec server configuration: minimum 2 CPUs, 32 cores, 128 GB RAM, 12 TB storage — capable of completing 40 × 6 Gb RNA-Seq analyses per day. | |
| User Management | Single-machine version only; no user management. Only one user can operate at a time; multi-user simultaneous use is not supported. | Full user management system with administrator account. Multiple user accounts can be created, supporting simultaneous multi-user access. | Mendel Analytics supports multi-level rights management for users, files, workflows, and project groups. |
| Remote Login | Remote login not supported. | System supports remote login, enabling users to access and operate the platform from any location at any time. | |
| Maintenance & Upgrades | Annual maintenance and upgrade requires payment of 25% of the purchase price each year. | 2 years of free upgrades and maintenance included with purchase. From year 3, a 15% annual fee applies. | |
| Analysis Tools | Proprietary tools only; updates are slow and the selection is limited. Approximately 60 high-throughput sequencing tools available. | Uses widely cited open-source tools that are updated promptly. Over 200 tools available; the same tool can be used for multiple purposes. | In scientific publications, when users encounter unsatisfactory results, the competitor's platform only permits parameter adjustments — no additional analysis tools can be used as substitutes. |
| Project Collaboration | Collaboration not supported. | Multiple team members can participate in and collaborate on the same project, each with different permission levels. | |
| Databases | No databases included. | Databases pre-configured according to project requirements. | |
| Customisation | Not supported. | Customisation service available to integrate designated tools, databases, and pipelines per client requirements. | |
| Technical Support | No local company or direct technical support in the region; issues resolved through a reseller. | Company provides online technical support; users can contact technical staff directly for assistance. | |
| Product Updates | Manual updates; update fees apply. | Cloud-pushed updates; users download and apply relevant new features themselves at no additional cost. | |
| Result Reports | Retains analysis software parameter settings and results can be traced back. No web-based reports. | Retains all analysis parameter settings; results fully traceable. Automated generation of interactive web and PDF reports, shareable via link. | |
| Workflow DIY | Analysis workflows are fixed. | Users can freely construct and customise analysis workflows. | |
| Analysis Results | Results split across different versions; cost-effectiveness is low. | Supports both web-based and PDF output formats. | |
| System Integration | None. | All functions integrated into a single unified system. | Mendel Analytics supports multi-level rights management for users, files, workflows, and project groups. |
| Access Control | None. | Administrator account provided with granular access control. |
Try Mendel Analytics at No Cost
Qualified researchers receive a fully functional trial account — set up within 2 working days. Submit your application and our team will review and activate your account.
Get Started
Ready to Transform Your Genomic Data?
Contact us to learn more about Mendel Analytics, arrange a live demonstration, or discuss customisation requirements for your institution's specific analytical workflows.
Developed by Genosys Inc. · Distributed exclusively in Asia-Pacific by Total Genomics Solution